Jim Shaw
@jimshaw.bsky.social did:plc:irnc2rqp4oued7btjofpmke5
Postdoc at Dana-Farber and Harvard Med with Heng Li (@lh3lh3.bsky.social). Prev: UBC / UofT. I like thinking about biological sequence analysis and its applications to metagenomics / microbial genomics. https://jim-shaw-bluenote.github.io
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Jim Shaw (@jimshaw.bsky.social) ist seit 20 September 2023 auf Bluesky. Das Konto hat 1.257 Follower, folgt 584 Konten und hat 127 Posts veröffentlicht.
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This is provocative and I don't really agree, but I do think that agents can catch mistakes and errors in paper and their data that you can't. I think you should validate and reproduce papers (at least partially) with an agent and read its outputs, and consider them in your 100% human written review
Post anzeigen- Heng Li@lh3lh3.bsky.social
My thought on AI review: lh3.github.io/2026/10/27/l... TL;DR: journals are banning fully AI-generated review and I think that is the right decision
Post anzeigen 🚨 New preprint 🚨 We’ve discovered millions of viruses from sequencing data but we don’t always know who they infect. Our new tool, VHAMSTeR generates broad virus host predictions across the tree of life (prokaryote, plant, animal, fungi and protist hosts) A thread 🧵👇 www.biorxiv.org/content/10.6...
Post anzeigen1/3 I'm delighted to share that Amira, a tool I worked on during my PhD, has been published in Genome Biology! 🎉 Genome assembly often struggles to reconstruct AMR markers, meaning we can miss them entirely. Amira detects them more sensitively than existing approaches.
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