Jim Shaw

Jim Shaw

jimshaw.bsky.social

Postdoc at Dana-Farber and Harvard Med with Heng Li (@lh3lh3.bsky.social). Prev: UBC / UofT. I like thinking about biological sequence analysis and its applications to metagenomics / microbial genomics. https://jim-shaw-bluenote.github.io

👤 Joined on 20 September 2023

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📜 Kullanıcı Geçmişi

  • 20 Eyl 2023, 02:50
    🎉 Bluesky'e katıldı - İlk kullanıcı adı: @jimshaw.bsky.social
  • 10 Kas 2023, 05:28
    🔄 Profil bilgileri güncellendi

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Jase Gehring
18 October 2026 17:29

yes they actually believe this and it's just about the only thing you need to know to understand all of the rest of their actions

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Studying the Deep Evolution of Viruses in the Era of Artificial Intelligence Structure Prediction doi.org/10.1146/annu...

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Excited to announce ModDotPlot Browser! A interactive genomic dotplot viewer that runs entirely in a web browser. Load and explore whole chromosomes in seconds! Try it here: marbl.github.io/ModDotPlot-B... User guide:
 github.com/marbl/ModDot... 1/4

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LoL-align is out in @natmethods.nature.com! It aligns protein structures without superposition. More sensitive than TM-align and DALI, producing better alignments 5–20× faster. Now available in Foldseek! 📄 www.nature.com/articles/s41... 💾 github.com/steineggerlab/foldseek 🌐 search.foldseek.com

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Matt Olm
12 October 2026 17:47

Introducing Microbiome Repo, a catalog of every public human gut metagenome (>500k samples) with metadata pulled straight from sequence archives, papers, and supplements! olmlab.github.io/microbiome_r... Published gut metagenomes? Search your name and see if it got your study! Feedback welcome

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