jimshaw.bsky.social
Postdoc at Dana-Farber and Harvard Med with Heng Li (@lh3lh3.bsky.social). Prev: UBC / UofT. I like thinking about biological sequence analysis and its applications to metagenomics / microbial genomics. https://jim-shaw-bluenote.github.io
👤 Joined on 20 September 2023
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@jimshaw.bsky.socialyes they actually believe this and it's just about the only thing you need to know to understand all of the rest of their actions
Show PostStudying the Deep Evolution of Viruses in the Era of Artificial Intelligence Structure Prediction doi.org/10.1146/annu...
Show PostExcited to announce ModDotPlot Browser! A interactive genomic dotplot viewer that runs entirely in a web browser. Load and explore whole chromosomes in seconds! Try it here: marbl.github.io/ModDotPlot-B... User guide: github.com/marbl/ModDot... 1/4
Show PostLoL-align is out in @natmethods.nature.com! It aligns protein structures without superposition. More sensitive than TM-align and DALI, producing better alignments 5–20× faster. Now available in Foldseek! 📄 www.nature.com/articles/s41... 💾 github.com/steineggerlab/foldseek 🌐 search.foldseek.com
Show PostIntroducing Microbiome Repo, a catalog of every public human gut metagenome (>500k samples) with metadata pulled straight from sequence archives, papers, and supplements! olmlab.github.io/microbiome_r... Published gut metagenomes? Search your name and see if it got your study! Feedback welcome
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