gaetanbenoit.bsky.social
Postdoc researcher in bioinformatics at Pasteur institute. Scalable methods and software for metagenomics. https://github.com/GaetanBenoitDev
👤 Joined on 06 January 2024
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@gaetanbenoit.bsky.socialI'll be there with Bonsai members, join us!
Show PostL'article de Mediapart de ce soir est d'une très grande importance. On peut y lire comment le gouvernement manipule les services de renseignement pour imputer à tord à la France insoumise des actes dont elle n'est pas responsable. C'est une véritable affaire d'Etat.
Show PostA New Algorithm for DNA Sequence Assembly by Idury and Waterman is still in restricted access behind a paywall. Published in nineteen effing ninety five. Seriously is this the Journal of Computational Biology or the Journal Against Computational Biology.
Show PostI’m excited to share our new preprint introducing HipHap, a tool for assigning long reads to haplotype-resolved diploid reference assemblies! With Max Marin, Matthew Meyerson, and @lh3lh3.bsky.social Preprint: www.biorxiv.org/content/10.6... 🧵 1/6
Show PostSkani (github.com/bluenote-157...) is now v0.4.0! Big performance update: **~2.5x faster** and ~30-40% less RAM for average nucleotide identity (ANI) comparison of genomes. The database format has changed (breaks forward compatibility; watch out!).
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