Tomàs Montserrat Ayuso

tmontsay.bsky.social

05 December 2024 00:53

Not checking nuclear markers like MALAT1 or intronic reads in your scRNA-seq data?🚨 We show their power to flag low-quality cells—even in top public datasets. It’s time to prioritize better QC for cleaner, more reliable genomics research! Read more: bmcgenomics.biomedcentral.com/articles/10.... 1/8

Malte Kuehl

maltekuehl.com

24 November 2024 18:01

Also seems like a limitation of current synthetic benchmarks.. Evaluating AUPRC without taking cell type/disease bias into account may not identify the best algorithm.. I would rather discard 5% equally among cell types with worse AUPRC than 1% overall but specific for a cell type or condition

Jalees Rehman

jalees.bsky.social

21 November 2024 01:42

Timing is everything: advances in quantifying splicing kinetics www.cell.com/trends/cell-...

Altmetric

altmetric.com

18 November 2024 20:00

We strongly suggest that academic publishers and other platforms that host research rapidly implement a Share to Bluesky button for their articles. Here's how: docs.bsky.app/docs/advance... #AcademicSky #HigherEd #Altmetrics

Casey Greene

casey.greenelab.com

15 November 2024 02:01

There are so many people moving over that I'm sure I'm missing folks. Can we make a #compbio / #genomics intro thread to get reacquainted? I'm at the University of Colorado. I often say that if you pick two of three from #transcriptome, #ML, and #publicdata, my lab is probably interested.