Masa A. Shimazoe

Masa A. Shimazoe

masaashimazoe.bsky.social

Ph. D. Student in Maeshima lab in NIG @kazu-maeshima.bsky.social Biophysics, Chromatin / Kyoto Uni. → NIG https://sites.google.com/view/masa-a-shimazoe/home

👤 Joined on 03 December 2024

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  • 03 Ara 2024, 12:46
    🎉 Bluesky'e katıldı - İlk kullanıcı adı: @masaashimazoe.bsky.social

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❤️ Beğendiği Gönderiler

Bin Zhang
19 October 2026 03:24

How open is “open” chromatin? Our new Nature Genetics paper uses nucleosome-resolution modeling to reveal condensed euchromatin domains with short, accessible regulatory regions at the surface. www.nature.com/articles/s41...

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Our latest paper is out in @embojournal.org! Chromatin compaction is a hallmark of apoptosis, but the mechanism & function of this process was unclear. We show apoptotic compaction is required to prevent fragmented DNA from spreading beyond the dying cell, and is driven by histone deacetylation.

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Our new paper is out @jcellsci.bsky.social 🧬✨ doi.org/10.1242/jcs.... @ynagata.bsky.social et al combined single-nucleosome imaging + Fucci probes. H2B-Halo motion stays nearly constant from G1 to G2. H3.3-Halo euchromatin nucleosomes are more mobile, but their motion also stays nearly constant.

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Normalization: most important part of any analysis, also the part nobody talks about. This paper, in my view, is all about appropriate normalization. Then check against “all available data”, and get one clean conclusion. Really neat! Joe Paggi @binzmit.bsky.social www.nature.com/articles/s41...

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Very nice new paper from Paggi, Long, Zhang using physical modeling of RCMC data to reconstruct physical structures of euchromatin at the nucleosome scale: Euchromatin forms condensed domains and E-P interactions largely occur on the surface! www.nature.com/articles/s41...

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