Torsten Seemann
torstenseemann.bsky.social
Professor @ University of Melbourne, Australia Microbial bioinformatics, genomics, software, clinical and public health microbiology https://tseemann.github.io
👤 Joined on 24 September 2023
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- 24 Eyl 2023, 23:43
🎉 Bluesky'e katıldı - İlk kullanıcı adı:
@torstenseemann.bsky.social - 10 Kas 2023, 02:29
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My bacterial genomics experience led me to try Shovill (Spades) from @torstenseemann.bsky.social and I found that with some checking of settings, Shovill did a great job with the Histoplasma SRA samples. Three assemblies were too large/contaminated, but that left me with 403 usable assemblies.
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Great to see PHA4GE members at GMI16 in Tunis. 🧬🌍 @torstenseemann.bsky.social, @happykhan.mstdn.science.ap.brid.gy, @firefoxx66.bsky.social, @ruthtimme.bsky.social and Heather Carleton-Romer shared work on genomic surveillance, metadata and data sharing. #PHA4GE #GMI16
Show PostI do it for bioinformatic software. Thanks to @torstenseemann.bsky.social for Prokka, abricate and mlst etc, and @treangen.bsky.social for ParSNP, and the people behind chewBBACA, Spades, @arambaut.bsky.social for Figtree. Would not be doing genomics bioinformatics without them!
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"We did go so far as to aggregate our fastqc with multiqc, but--again--we didn't look at it."
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