Ryo Harada

Ryo Harada

ryoharada.bsky.social

Postdoc at Ryoma’s lab, Kyoto University Phylogenomics, Eukaryotic Evolution, Symbiosis Tsukuba -> Dalhousie -> Kyoto

👤 Joined on 03 May 2025

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  • 03 May 2025, 04:48
    🎉 Bluesky'e katıldı - İlk kullanıcı adı: @ryoharada.bsky.social

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Excited to join such a wonderful team! I look forward to strengthening my scientific communication skills and making meaningful contributions to the society’s journals @molbioevol.bsky.social @genomebiolevol.bsky.social !

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Congrats Ryo!!

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Sishuo Wang
11 September 2026 14:28

[new preprint] By sampling new basal non-symbiotic members and applying mixture subs models (incl GTRmpix) in dating, we show a contemporaneous emergence of Bradyrhizobium nodulation and legumes using an approach that co-dates both symbionts and legumes. www.biorxiv.org/content/10.6...

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1/ Deep-time phylogenetics is hard: overly simplistic substitution models can mislead tree estimation at the billion year timescale. Our new preprint introduces GTRspmix, a protein modeling framework designed to more realistically model site-to-site heterogeneity in amino acid replacement. 🧵

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1/ Our new paper in Systematic Biology "Modeling Site-and-Branch-Heterogeneity with GFmix" led by @cgpmcc.bsky.social describes improved ways to model compositional heterogeneity across both sites and branches—an important source of error in deep phylogenomics. doi.org/10.1093/sysb...

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