Turns out the order of your scRNA-seq QC pipeline matters more than we thought: removing ambient RNA before doublet detection can reduce doublet detection performance! Our new paper from the amazing PhD student @michellemeier.bsky.social

Show Post

I'm happy to announce the fall 2026 Open Bioimaging Practices Meetup schedule. We'll have 3 exciting meetings about developments in the OME-Zarr space: - OME-Zarr viewers - Multiplexed Image analysis in OME-Zarr - Spatial OMICs in OME-Zarr See www.biovisioncenter.uzh.ch/en/events/Op... (🧵 1/10)

Show Post

A paper is finished when the embarrassment of submitting it becomes smaller than the embarrassment of still working on it

Show Post

A commentary on "Training as infrastructure for biological data science in wartime Ukraine" doi.org/10.1038/s415... (Nat. Genet.)

Show Post

Our paper is out in Nature Methods! 🧑‍💻 There are 50+ methods for spatially-aware clustering on spatial transcriptomics data. How should we use them? A thread 🧵 (1/7) 📄 doi.org/10.1038/s415... #spatialtranscriptomics #bioinformatics #computationalbiology

Show Post