chipotlab.bsky.social

12 September 2026 08:11

No predefined reaction coordinate. No mechanistic guesswork. No massive sampling campaign. Gen-COMPAS reconstructs biomolecular transition pathways from endpoint structures alone. Protein folding, allostery, membrane transport. Now in Nature. @nature.com @springernature.com

Yo Akiyama

yoakiyama.bsky.social

22 July 2026 09:08

Excited to share our now published paper @cp-cell.bsky.social highlighting advances in modeling the evolution of protein-protein interactions with MSA Pairformer. Big thanks to Zhidian Zhang, Olivia Tang, @eunbelivable.bsky.social @milot.bsky.social @martinsteinegger.bsky.social and @sokrypton.org!

Yo Akiyama

yoakiyama.bsky.social

22 July 2026 09:07

Bonus: this project actually started with the goal of understanding how structure prediction models extract structural information from MSAs, but I may have lost the plot… Please check out @sokrypton.org's X thread (and Methods S1 of the manuscript) to learn more x.com/sokrypton/st... (10/10)

Alisia Fadini

alisiafadini.bsky.social

21 July 2026 18:09

Atomic models powered bioAI's first era. Experiments measure more. @rs-station.bsky.social is joining omsf.io to unlock interpretation of raw exp observables at scale (blog👇); we'll partner with @openfold.io, @openbind.bsky.social , and cryo-EM+X-ray facilities to make this routine. Join us!

We are implementing a similar policy at @arxiv.bsky.social. If there is incontrovertible evidence of LLM slop in a paper, this means the authors did not take the time to read the LLM output and we can't trust anything else in the paper. Penalty is 1 year ban from arXiv followed by...