Rob Patro

robp.bsky.social

21 September 2026 16:03

It's here! new preprint: Gravlax, an annotation-independent molecular evidence archive for scRNA-seq. A count matrix freezes one annotation. Molecules never change. Instead, gravlax keeps the evidence. Requantify, query, and discover under any annotation. 🧵 www.biorxiv.org/content/10.6...

Rob Patro

robp.bsky.social

23 August 2026 20:34

The first public release of seqproc is out! 🎉 v0.1.1, powered by ANTISEQUENCE v0.1.0. seqproc let's you describe a sequencing protocol in EFGDL, compile it into a fast Rust pipeline for matching, filtering, correction, and FASTQ transformation. A powerful read pre-processing engine! 1/6

Lior Pachter

lpachter.bsky.social

30 July 2026 14:21

One of the major pains of academia is having to click through labyrinths of webpages to submit papers. Now, thanks to Joe Rich (and AI), problem solved! His tool is called PaperPush and is available at github.com/pachterlab/p... It's super easy to use! 1/🧵

Nature Reviews Genetics

natrevgenet.nature.com

24 July 2026 13:54

Building and applying pangenome references to capture genetic diversity go.nature.com/4vMAlwE #Review by @hufsahashraf.bsky.social, @danydoerr.bsky.social, Jana Ebler & @tobiasmar.bsky.social @hhu.de Free to read here: rdcu.be/fumeF

bioRxiv Genomics

biorxiv-genomic.bsky.social

24 July 2026 13:34

HPRC2: A human pangenome reference with near-complete coverage of common genetic variation https://www.biorxiv.org/content/10.64898/2026.07.21.739710v1