novica

novica.bsky.social

18 October 2026 18:20

But as the excel become more and more comlicated to maintain, espeacially over time and versions, I tried moving it all to a locally run FastAPI. So now it runs with uvx. It's nice. If you are looking for a way to track skills in your team it can work. github.com/novica/compe...

Jeroen Ooms

jeroenooms.bsky.social

15 October 2026 17:46

New version of #rstats curl bindings on CRAN. On Windows/Mac, the statically linked libcurl includes the latest CVE patches. So if you are worried about these things, better update. On other operating systems, libcurl is part of your distro and has to be patched by them. cran.dev/curl

Dirk Eddelbuettel

eddelbuettel.com

15 October 2026 17:45

PSA We can have fast(er) #Rstats continuous integration via #r2u at #codeberg. Thanks to @zeileis.org for the recent question, Doug Kelkhoff for the initial nudge, and @coatless.bsky.social for sorting details out. You can use both forgejo actions and woodpecker. See codeberg.org/eddelbuettel...

Tim Fennell

tfenne.bsky.social

28 September 2026 21:34

New release of chelae over the weekend. The fastest adapter and qual trimming software you've probably never heard of 😉 Still measures the fastest of the bunch, though AdapterRemoval v3 isn't too far behind. Now with support for streaming interleaved FASTQ! 🧬 🖥️ github.com/fulcrumgenom...

Samuel Lampa

smllmp.bsky.social

27 September 2026 18:07

New blog: Emu runs an order of magnitude faster for high quality (sup) R10 @nanoporetech.com 16S data, with the lr:hq preset for minimap2, in addition to improving downstream analysis as previously blogged by @mbhall88.bsky.social: livingsystems.cc/posts/lrhq-s... #bioinformatics #microbinfie