The Banfield Lab
banfieldlab.bsky.social
Located at the University of California-Berkeley at the Innovative Genomics Institute. Purveyors of Microbial Ecology, Bioinformatics, & Nanogeoscience. Reposts or likes≠endorsements. https://www.banfieldlab.com/
👤 Joined on 28 February 2025
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- 28 Şub 2025, 00:27
🎉 Bluesky'e katıldı - İlk kullanıcı adı:
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LoL-align is out in @natmethods.nature.com! It aligns protein structures without superposition. More sensitive than TM-align and DALI, producing better alignments 5–20× faster. Now available in Foldseek! 📄 www.nature.com/articles/s41... 💾 github.com/steineggerlab/foldseek 🌐 search.foldseek.com
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I’m happy to share our study out in Microbiome! link.springer.com/article/10.1... Knowing that coculture interactions often disappear in larger communities, we used cocktails of phages to study vitamin exchange interactions within enrichment cultures.
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New preprint! Super excited to share these computational tools for predicting lanthanide binding sites in proteins across the tree of life.
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The review also covers other discoveries from @banfieldlab.bsky.social and @linxingchen1987.bsky.social , such as Borgs and Hodors! Check out the preprint on pMEGAs: www.biorxiv.org/content/10.1...
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The origin and evolution of archaeal Borg extrachromosomal elements https://www.biorxiv.org/content/10.64898/2026.05.22.727314v1
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