ernstschmid.bsky.social
Full stack developer who occasionally wears a lab coat. Currently a machine learning researcher at Manifold Bio.
👤 Joined on 23 November 2024
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@ernstschmid.bsky.socialAlphaFold Database is expanding into pandemic preparedness. Together with NVIDIA, DeepMind, EBI et al. we exhaustively predicted ~1.7 million homo- & heterodimers across 2,812 viral proteomes, resulting in 8,028 high-confidence predictions. 📄 research.nvidia.com/labs/dbr/ass... 🌐 alphafold.ebi.ac.uk
Show PostAlphaFold2-WebGPU now supports AlphaFold-Multimer. As in ColabFold, simply use : to separate chains in the sequence input. It is also becoming much more stable: I was able to predict a 491-aa protein in ~4 minutes in M4 Pro. Chrome currently performs better than Firefox for WebGPU, unfortunately.
Show PostStructural basis for nutrient-activated channel opening in bacterial spore germination receptors https://www.biorxiv.org/content/10.64898/2026.08.27.747515v1
Show PostThis is now published! For those interested in microbial mechanotransduction: www.cell.com/current-biol...
Show Post🧬 How is MCM2-7 switched on? Our paper shows DDK phosphorylation exposes Sld3-binding sites on Mcm4/Mcm6. Sld3-Cdc45 then delivers Cdc45 to Mcm2/Mcm5, driving CMG assembly. In summary, our work explains why MCM2-7 phosphorylation is needed to turn on replication. www.nature.com/articles/s41...
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