kjolley.bsky.social
Bioinformatician in the Department of Biology, University of Oxford. Working on microbial genomics | Developer of @PubMLST.org and BIGSdb | https://orcid.org/0000-0002-0751-0287
👤 Joined on 15 October 2023
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Really happy to share this new pre print on the development of a cgMLST and LIN code for Streptococcus pyogenes, led by Yan Ryan at @ukhsa.bsky.social www.biorxiv.org/content/10.6...
Show PostNew paper 🧪🧬🧫GeneScanner is our new tool to profile genetic variation in bacterial populations. Use via GitHub or @pubmlst.org. Thanks to Ko and Pri @sheppardlab.bsky.social @broncio.bsky.social @kjolley.bsky.social @microbiologysociety.org @imibirmingham.bsky.social @ineosoxford.bsky.social
Show PostThanks to @kjolley.bsky.social @maidenlab.bsky.social @katholt.bsky.social @kelwyres.bsky.social @daanensen.bsky.social @pathogenwatch.bsky.social and many others for this huge collaboration, turning a simple concept into a practical implementation for microbial strain nomenclatures
Show PostIt's out! The LIN code approach for genomic taxonomy of microbial strains and its applications in genomic epidemiology journals.plos.org/plosbiology/...
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