ppgardne.bsky.social
Bioinformatics, RNA, benchmarking & educating to fund kayaking and fishing. Ōtepoti/Dunedin, Aotearoa/New Zealand. From Whāngārā.
👤 Joined on 06 October 2023
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I represent the synteny more or less as a hypergraph, which means we're storing all chromosme interactions at once, rather than in many pairwise graph matrices. Rules: chroms may move along a row or be reversed. Internal parts of a chrom must not change order, and no connections may be removed. 2/
Show PostAn attempt to explain what this does, using a simple case. How much 'tangle' in a synteny plot comes how we chose to order chromosomes, and how much is unavoidable because it represents accurate crossings in the data? 1/
Show PostAnd I want 10000 wasps to swarm david seymour. We sometimes just dont get what we want
Show PostThat’s funny cos I want fewer charter schools by 2028, and better school lunches for kids by 2027
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