arredondo.bsky.social
Postdoc, Scientia Fellow at Jukka Corander's group (University of Oslo). Microbial and plasmid genomics! Main interests in bioinformatics, data science and everything in the middle.
👤 Joined on 15 September 2023
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@arredondo.bsky.social"E. coli Nissle 1917 (EcN) remains a commonly used probiotic, despite harboring the pks operon and inducing double strand DNA breaks." www.cell.com/cancer-cell/... #MicroSky #MicrobiomeSky
Show PostWould it be great to have a tool that harmonises all the different AMR prediction tool outputs? We agree and outline it in this paper! www.biorxiv.org/content/10.1...
Show PostLatest paper with the amazing Zong now live in Lancet Microbe. A systematic review of the use of phages for bacterial decolonisation www.sciencedirect.com/science/arti...
Show PostEvery time I submit files to ENA I forget how I did it the previous time. So I have written up a guide to my future myself of how I normally approach it. Maybe it might be useful for someone else. padpadpadpad.netlify.app/posts/ena_fi...
Show PostFirst step in a community project to provide a uniformly assembled, annotated and searchable set of bacterial genomes, our preprint on our initial release of 1.9 million genome assemblies+taxonomic estimates. (figure compares with previous 661k dataset) www.biorxiv.org/content/10.1... #microsky
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