Antonio Scialdone

antonio-scialdone.bsky.social

03 March 2026 20:49

Great work led by @marcostock.bsky.social and Florin Ratajczak , thanks to all coauthors Paul Bertin @evahoermanseder.bsky.social @yoshuabengio.bsky.social Jason Hartford @interactome.bsky.social Matthias Heinig @alextong.bsky.social

Antonio Scialdone

antonio-scialdone.bsky.social

03 March 2026 20:49

Our new preprint is out: www.biorxiv.org/content/10.6... We show that GRN benchmarks commonly used can overestimate performance due to negative-sampling choices, sometimes allowing simple degree-based baselines to rival more complex GNNs. A reminder of why bias-aware evaluation matters!

Antonio Scialdone

antonio-scialdone.bsky.social

03 March 2026 20:49

Kudos to @veronicafin.bsky.social for her great work, in a project funded by @epicrossborders.bsky.social together with @catavallejos.bsky.social

Antonio Scialdone

antonio-scialdone.bsky.social

03 March 2026 20:48

Transposable elements are increasingly studied in single-cell data, but how reliable are current locus-level quantification methods in short-read scRNA-seq data? If you work with single-cell RNA-seq or TEs, we hope this is a useful resource — feedback very welcome!

Arianna Ciccone

ariannaciccone.bsky.social

15 December 2025 19:37

If Europe truly wants to be a real player in the geopolitical arena and to shape its own security and future, it must match strong words with decisive action. Europe has one powerful lever in its hands right now: Russia’s frozen assets. It’s time to use them.