Noah Whiteman

Noah Whiteman

nkwhiteman.bsky.social

Personal account, views are mine alone. Coevolution researcher: www.whitemanlab.org / Author: www.mostdeliciouspoison.com / Professor + Head, Division of Genetics, Genomics, Evolution and Development, Molecular & Cell Biology, UC-Berkeley ☮️ 🕊️

👤 Joined on 22 August 2023

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  • 22 Ağu 2023, 04:30
    🎉 Bluesky'e katıldı - İlk kullanıcı adı: @nkwhiteman.bsky.social
  • 08 Kas 2023, 02:20
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❤️ Beğendiği Gönderiler

Student journalists get it again “the USC administration laid off workers in departments not largely responsible for the deficit. Rather than making cutbacks in management — one of the main contributors in overwhelming costs — USC cut its core programs.” www.uscannenbergmedia.com/2026/10/16/u...

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Joe Hanly
20 October 2026 16:03

I've complained on here a few times about synteny plots that are harder to read than they need to be. I decided it was time to actaully do something about it: introducing SynTangle, a tool for untangling whole-genome synteny plots github.com/Hanliconius/... 1/

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This finally out in www.internationaloaksociety.org society journal... message me if you want a pdf and aren't a member of International Oak Society (which you should be! It's one of the best societies ever!!!).

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“Poetry of the waves”, a kimono created by artist Takahashi, Takayuki . Fine Work award from the Japan Dyers Association

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Joe Hanly
20 October 2026 16:02

I've made this so it can just take the output of Genespace and reorient the graph to having minimized tangling, and have a less tested version that can take other inputs including minimap2 alignments. This is very much in beta, hit me up if things aren't working. Here's a more complex untangling.

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