nkwhiteman.bsky.social
Personal account, views are mine alone. Coevolution researcher: www.whitemanlab.org / Author: www.mostdeliciouspoison.com / Professor + Head, Division of Genetics, Genomics, Evolution and Development, Molecular & Cell Biology, UC-Berkeley ☮️ 🕊️
👤 Joined on 22 August 2023
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Student journalists get it again “the USC administration laid off workers in departments not largely responsible for the deficit. Rather than making cutbacks in management — one of the main contributors in overwhelming costs — USC cut its core programs.” www.uscannenbergmedia.com/2026/10/16/u...
Show PostI've complained on here a few times about synteny plots that are harder to read than they need to be. I decided it was time to actaully do something about it: introducing SynTangle, a tool for untangling whole-genome synteny plots github.com/Hanliconius/... 1/
Show PostThis finally out in www.internationaloaksociety.org society journal... message me if you want a pdf and aren't a member of International Oak Society (which you should be! It's one of the best societies ever!!!).
Show Post“Poetry of the waves”, a kimono created by artist Takahashi, Takayuki . Fine Work award from the Japan Dyers Association
Show PostI've made this so it can just take the output of Genespace and reorient the graph to having minimized tangling, and have a less tested version that can take other inputs including minimap2 alignments. This is very much in beta, hit me up if things aren't working. Here's a more complex untangling.
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