etowah0.bsky.social
enjoying and bemoaning biology. phd student @columbia prev. @harvardmed @ginkgo @yale
👤 Joined on 10 February 2025
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@etowah0.bsky.social@openbind.bsky.social is pushing the frontier of [structural biology x AI] by providing much needed training data to power cofolding. Now, the first cofolding model is out in the open, ready to inform drug discovery efforts -- for anyone and everyone. We love it!
Show Post7/ Where we're going: teaming with @openfold.io, @openbind.bsky.social, cryo-EM + X-ray facilities to make structure beyond the single-structure frontier a reality. Thinking about this too? We’re an open community – join us: rs-station.github.io reciprocalspa-cfs9659.slack.com/archives/C07...
Show Post6/ Concretely, we will build: • Libraries for diffraction, scattering, imaging, and time-resolved experiments. • Differentiable forward models that connect experiments to conformations. - Data-driven tools that turn experiment into structure imbued with dynamics.
Show Post5/ To address that gap, from our new home at OMSF we're building the AI↔️structure interface. It cuts both ways: • AI to analyze experiments (new&old) • Exp. observables will train the next bioAI Downstream: cofolding, protein-protein interfaces & biomolecular-dynamics design
Show Post4/ AlphaFold and peers were trained on deposited structures, not the experimental observables. With this compression, important functional elements like dynamics got lost along the way.
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