Yaron Orenstein
@yaronorenstein.bsky.social did:plc:e5uks7ibyplo6pjszyonamsu
Associate Professor in Computer Science and Life Sciences at Bar-Ilan University
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Yaron Orenstein (@yaronorenstein.bsky.social) é um usuário do Bluesky desde 22 novembro 2024. Tem 40 seguidores, segue 108 contas e publicou 17 posts.
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#RECOMB2027 is now accepting submissions and we'd love to see your best work! 📌 Abstract registration: October 28 📌 Full paper submission: November 4 📜More info: recomb.org/recomb2027/c...
Ver postCute new idea in here: Existing ABB+ (green) minimizers prefer kmers starting with 1 and then as many 0 as possible (in the binary case). "Spacers" (orange) instead prefer kmers starting with 10 that have maximum distance to the next occurrence of 10. (For DNA, A maps to 1 and CTG map to 0.)
Ver post10-minimizers: a promising class of constant-space minimizers https://www.biorxiv.org/content/10.64898/2026.03.16.712052v1
Ver postAnnouncing a new tool for "denoising" long-read amplicon sequences: savont. Savont enables amplicon sequence variants (ASVs) directly from nanopore (or HiFi) long reads. Tested on 16S nanopore amplicons -- seems to work okay. 1/4 github.com/bluenote-157...
Ver postAlphaGenome is out in @nature.com today along with model weights! 🧬 📄 Paper: www.nature.com/articles/s41... 💻 Weights: github.com/google-deepm... Getting here wasn’t a straight path. We discussed the story behind the model, paper & API in the following roundtable: youtu.be/V8lhUqKqzUc
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